Tutorials

Guide step by step

Outline of the process and steps required to compute various metrics.

Step 01 - Compute AMR metrics

Step 01 - Compute AMR metrics

Step 02 - Temporal evolution

Step 02 - Temporal evolution

Step 03 - Time Series Analysis

Step 03 - Time Series Analysis

Step 04 - TSA to estimate trends

Step 04 - TSA to estimate trends

Computing AMR metrics

Examples with the most important metrics.

Single Antimicrobial Resistance (SARI)

Single Antimicrobial Resistance (``SARI``)

Spectrum of Activity (ASAI)

Spectrum of Activity (``ASAI``)

Multiple Resistance (MARI)

Multiple Resistance (``MARI``)

Single Resistance Trend (SART)

Single Resistance Trend (``SART``)

Drug Resistance Index (DRI)

Drug Resistance Index (``DRI``)

Collateral Sensitivity Index (ACSI)

Collateral Sensitivity Index (``ACSI``)

Metrics

Examples computing metrics.

Metrics - errors

Metrics - errors

Metrics - weights

Metrics - weights

Time-series analysis (regression)

Examples using regression and time-series analysis.

Using Theil-Sen estimator

Using Theil-Sen estimator

Using weighted least squares (WLS)

Using weighted least squares (WLS)

Using autoregressive model ARIMA

Using autoregressive model ARIMA

Using SARIMAX for seasonality

Using SARIMAX for seasonality

Using an ensemble WLS + ARMA

Using an ensemble WLS + ARMA

Using the statistical tests wrappers

Examples using some wrappers implemented to compute statistical tests.

ADFuller

ADFuller

Correlation

Correlation

Kendall

Kendall

Stationarity

Stationarity