:orphan:



.. _sphx_glr__examples:

General
========


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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_explainerdashboard:

Explainer Dashboard
-------------------

Gallery of examples using ``explainerdashboard``.
Gallery of examples using ``ldap3``.



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    <div class="sphx-glr-thumbcontainer" tooltip="This example runs an app which an interactive user interface to explore the importance of the f...">

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 .. figure:: /_examples/explainerdashboard/images/thumb/sphx_glr_plot_main_01_thumb.png
     :alt: 01. Explainer Dash

     :ref:`sphx_glr__examples_explainerdashboard_plot_main_01.py`

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    </div>


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   /_examples/explainerdashboard/plot_main_01
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_factory-boy:

Factory Boy
-----------

Gallery of examples using ``factory-boy``.
Gallery of examples using ``ldap3``.



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    <div class="sphx-glr-thumbcontainer" tooltip="01. Generate microbiology data">

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 .. figure:: /_examples/factory-boy/images/thumb/sphx_glr_microbiology_thumb.png
     :alt: 01. Generate microbiology data

     :ref:`sphx_glr__examples_factory-boy_microbiology.py`

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    </div>


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   /_examples/factory-boy/microbiology
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_jsonpickle:

jsonpickle
---------------------

Gallery of examples using ``ldap3``.



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    <div class="sphx-glr-thumbcontainer" tooltip="Description">

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 .. figure:: /_examples/jsonpickle/images/thumb/sphx_glr_main_thumb.png
     :alt: 01. Basic example

     :ref:`sphx_glr__examples_jsonpickle_main.py`

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    </div>


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   /_examples/jsonpickle/main
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_ldap-tests:

LDAP
------

Gallery of examples using ``ldap3``.



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    <div class="sphx-glr-thumbcontainer" tooltip="It requires ldap3 and python-ldap-test [2017!].">

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 .. figure:: /_examples/ldap-tests/images/thumb/sphx_glr_script_01_thumb.png
     :alt: 01. LDAP sample

     :ref:`sphx_glr__examples_ldap-tests_script_01.py`

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    </div>


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   /_examples/ldap-tests/script_01
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_matplotlib:

Matplotlib / Seaborn
---------------------

Gallery of examples using ``matplotlib`` and/or ``seaborn``.



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    <div class="sphx-glr-thumbcontainer" tooltip="Display data as an image, i.e., on a 2D regular raster.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main01_imshow_thumb.png
     :alt: 01. ``mpl.imshow``

     :ref:`sphx_glr__examples_matplotlib_plot_main01_imshow.py`

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    </div>


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   /_examples/matplotlib/plot_main01_imshow

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    <div class="sphx-glr-thumbcontainer" tooltip="Make a 2D hexagonal binning plot of points x, y.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main02_hexbin_thumb.png
     :alt: 02. ``mpl.hexbin``

     :ref:`sphx_glr__examples_matplotlib_plot_main02_hexbin.py`

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    </div>


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   /_examples/matplotlib/plot_main02_hexbin

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    <div class="sphx-glr-thumbcontainer" tooltip="Make a 2D histogram plot.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main03_hist2d_thumb.png
     :alt: 03. ``mpl.hist2d``

     :ref:`sphx_glr__examples_matplotlib_plot_main03_hist2d.py`

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    </div>


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   /_examples/matplotlib/plot_main03_hist2d

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    <div class="sphx-glr-thumbcontainer" tooltip="This example estimates and displays the Gaussian Mixture Model (GMM) and KDE (Kernel Density Es...">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main04_gmm_kde_thumb.png
     :alt: 04. Plot GMM and KDE

     :ref:`sphx_glr__examples_matplotlib_plot_main04_gmm_kde.py`

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    </div>


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   /_examples/matplotlib/plot_main04_gmm_kde

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot a matrix dataset as a hierarchically-clustered heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main05_a_clustermap_thumb.png
     :alt: 05.a ``sns.clustermap`` basic sample

     :ref:`sphx_glr__examples_matplotlib_plot_main05_a_clustermap.py`

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    </div>


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   /_examples/matplotlib/plot_main05_a_clustermap

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot a matrix dataset as a hierarchically-clustered heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main05_b_clustermap_thumb.png
     :alt: 05.b ``sns.clustermap`` with ``network.csv``

     :ref:`sphx_glr__examples_matplotlib_plot_main05_b_clustermap.py`

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    </div>


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   /_examples/matplotlib/plot_main05_b_clustermap

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot a matrix dataset as a hierarchically-clustered heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main05_c_clustermap_thumb.png
     :alt: 05.c ``sns.clustermap`` multiple categories

     :ref:`sphx_glr__examples_matplotlib_plot_main05_c_clustermap.py`

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    </div>


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   /_examples/matplotlib/plot_main05_c_clustermap

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot rectangular data as a color-encoded matrix.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main06_a_heatmap_thumb.png
     :alt: 06.a ``sns.heatmap`` for CRI ``v1``

     :ref:`sphx_glr__examples_matplotlib_plot_main06_a_heatmap.py`

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    </div>


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   /_examples/matplotlib/plot_main06_a_heatmap

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot rectangular data as a color-encoded matrix.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main06_b_heatmap_thumb.png
     :alt: 06.b ``sns.heatmap`` for CRI ``v2``

     :ref:`sphx_glr__examples_matplotlib_plot_main06_b_heatmap.py`

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    </div>


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   /_examples/matplotlib/plot_main06_b_heatmap

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    <div class="sphx-glr-thumbcontainer" tooltip="Since the computation of the Collateral Sensitivity Index is quite computationally expensive, t...">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main06_c_collateral_sensitivity_thumb.png
     :alt: 06.c Collateral Sensitivity Index (CRI)

     :ref:`sphx_glr__examples_matplotlib_plot_main06_c_collateral_sensitivity.py`

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    </div>


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   /_examples/matplotlib/plot_main06_c_collateral_sensitivity

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    <div class="sphx-glr-thumbcontainer" tooltip="Since the computation of the Collateral Sensitivity Index is quite computationally expensive, t...">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main06_d_collateral_sensitivity_thumb.png
     :alt: 06.d Collateral Sensitivity Index (CRI)

     :ref:`sphx_glr__examples_matplotlib_plot_main06_d_collateral_sensitivity.py`

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    </div>


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   /_examples/matplotlib/plot_main06_d_collateral_sensitivity

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    <div class="sphx-glr-thumbcontainer" tooltip="Use binned_statistic_2d and display using heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main07_a_2dbin_stat_thumb.png
     :alt: 07.a ``stats.2dbin`` and ``mpl.heatmap``

     :ref:`sphx_glr__examples_matplotlib_plot_main07_a_2dbin_stat.py`

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    </div>


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   /_examples/matplotlib/plot_main07_a_2dbin_stat

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    <div class="sphx-glr-thumbcontainer" tooltip="Use binned_statistic_2d and display using heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main07_b_2dbin_heatmap_thumb.png
     :alt: 07.b ``stats.2dbin`` and ``sns.heatmap``

     :ref:`sphx_glr__examples_matplotlib_plot_main07_b_2dbin_heatmap.py`

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    </div>


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   /_examples/matplotlib/plot_main07_b_2dbin_heatmap

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    <div class="sphx-glr-thumbcontainer" tooltip="Use binned_statistic_2d and display using heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main07_c_2dbin_fake_thumb.png
     :alt: 07.c ``stats.2dbin`` with fake data

     :ref:`sphx_glr__examples_matplotlib_plot_main07_c_2dbin_fake.py`

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    </div>


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   /_examples/matplotlib/plot_main07_c_2dbin_fake

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    <div class="sphx-glr-thumbcontainer" tooltip="Use binned_statistic_2d and display using heatmap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main07_d_2dbin_shap_thumb.png
     :alt: 07.d ``stats.2dbin`` with ``shap.csv``

     :ref:`sphx_glr__examples_matplotlib_plot_main07_d_2dbin_shap.py`

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    </div>


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   /_examples/matplotlib/plot_main07_d_2dbin_shap

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    <div class="sphx-glr-thumbcontainer" tooltip="Figure-level interface for drawing distribution plots onto a FacetGrid.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main07_e_displot_thumb.png
     :alt: 07.e ``sns.displot``

     :ref:`sphx_glr__examples_matplotlib_plot_main07_e_displot.py`

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    </div>


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   /_examples/matplotlib/plot_main07_e_displot

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    <div class="sphx-glr-thumbcontainer" tooltip="Plot bars and add a table to an Axes.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main08_table_thumb.png
     :alt: 08. ``plt.bar`` with ``plt.table``

     :ref:`sphx_glr__examples_matplotlib_plot_main08_table.py`

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    </div>


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   /_examples/matplotlib/plot_main08_table

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    <div class="sphx-glr-thumbcontainer" tooltip="Create a pseudocolor plot of an unstructured triangular grid.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main09_tripcolor_thumb.png
     :alt: 09. ``mpl.tripcolor``

     :ref:`sphx_glr__examples_matplotlib_plot_main09_tripcolor.py`

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    </div>


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   /_examples/matplotlib/plot_main09_tripcolor

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    <div class="sphx-glr-thumbcontainer" tooltip="Make a violin plot with a linear colormap.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main10_violin_cmap_thumb.png
     :alt: 10. ``mpl.violin`` with linear cmap

     :ref:`sphx_glr__examples_matplotlib_plot_main10_violin_cmap.py`

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    </div>


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   /_examples/matplotlib/plot_main10_violin_cmap

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    <div class="sphx-glr-thumbcontainer" tooltip="Create an animation.">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main20_animation_thumb.gif
     :alt: 20. Animation

     :ref:`sphx_glr__examples_matplotlib_plot_main20_animation.py`

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    </div>


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   /_examples/matplotlib/plot_main20_animation

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    <div class="sphx-glr-thumbcontainer" tooltip="The aim is to visualise all the features for all the timesteps to quickly see which shap values...">

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 .. figure:: /_examples/matplotlib/images/thumb/sphx_glr_plot_main30_sepsis_shap_boxplot_thumb.png
     :alt: 30. Sample shap.csv boxplot

     :ref:`sphx_glr__examples_matplotlib_plot_main30_sepsis_shap_boxplot.py`

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    </div>


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   /_examples/matplotlib/plot_main30_sepsis_shap_boxplot
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_other:

Other
-----

Gallery with ``miscellaneous`` examples.



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    <div class="sphx-glr-thumbcontainer" tooltip="The Segment Anything Model (SAM) produces high quality object masks from input prompts such as ...">

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 .. figure:: /_examples/other/images/thumb/sphx_glr_plot_main01_segment_anything_thumb.png
     :alt: 01. Segment anything

     :ref:`sphx_glr__examples_other_plot_main01_segment_anything.py`

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    </div>


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   /_examples/other/plot_main01_segment_anything

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    <div class="sphx-glr-thumbcontainer" tooltip="This example lists all the libraries installed in the environment using pip, gets their site ur...">

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 .. figure:: /_examples/other/images/thumb/sphx_glr_plot_main02_favicons_thumb.png
     :alt: 02. Plot favicons

     :ref:`sphx_glr__examples_other_plot_main02_favicons.py`

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    </div>


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   :hidden:

   /_examples/other/plot_main02_favicons
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_pandas:

Pandas
------

Gallery of examples using ``pandas``.



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    <div class="sphx-glr-thumbcontainer" tooltip="Example">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_format05_damien_sepsis_thumb.png
     :alt: 05. Format damien sepsis data

     :ref:`sphx_glr__examples_pandas_format05_damien_sepsis.py`

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    </div>


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   :hidden:

   /_examples/pandas/format05_damien_sepsis

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    <div class="sphx-glr-thumbcontainer" tooltip="06. Clean OUCRU v1.0">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_format06_stacked_oucru_v1_thumb.png
     :alt: 06. Clean OUCRU v1.0

     :ref:`sphx_glr__examples_pandas_format06_stacked_oucru_v1.py`

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    </div>


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   /_examples/pandas/format06_stacked_oucru_v1

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    <div class="sphx-glr-thumbcontainer" tooltip="02. Clean OUCRU v2.0">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_format06_stacked_oucru_v2_thumb.png
     :alt: 02. Clean OUCRU v2.0

     :ref:`sphx_glr__examples_pandas_format06_stacked_oucru_v2.py`

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    </div>


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   /_examples/pandas/format06_stacked_oucru_v2

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    <div class="sphx-glr-thumbcontainer" tooltip="01. Sliding window">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_format01_thumb.png
     :alt: 01. Sliding window

     :ref:`sphx_glr__examples_pandas_plot_format01.py`

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    </div>


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   /_examples/pandas/plot_format01

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    <div class="sphx-glr-thumbcontainer" tooltip="Aggregate patient&#x27;s data in a single row.">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_format02_thumb.png
     :alt: 02. Aggregation

     :ref:`sphx_glr__examples_pandas_plot_format02.py`

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    </div>


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   /_examples/pandas/plot_format02

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    <div class="sphx-glr-thumbcontainer" tooltip="Example">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_format03_thumb.png
     :alt: 03. Empty

     :ref:`sphx_glr__examples_pandas_plot_format03.py`

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    </div>


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   /_examples/pandas/plot_format03

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    <div class="sphx-glr-thumbcontainer" tooltip="Description...">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_format04_therapy_all_thumb.png
     :alt: 04. Format MIMIC therapy (all)

     :ref:`sphx_glr__examples_pandas_plot_format04_therapy_all.py`

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    </div>


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   /_examples/pandas/plot_format04_therapy_all

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    <div class="sphx-glr-thumbcontainer" tooltip="Description...">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_format04_therapy_one_thumb.png
     :alt: 04. Format MIMIC therapy (one)

     :ref:`sphx_glr__examples_pandas_plot_format04_therapy_one.py`

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    </div>


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   /_examples/pandas/plot_format04_therapy_one

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    <div class="sphx-glr-thumbcontainer" tooltip="99. Basic Example">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_main01_thumb.png
     :alt: 99. Basic Example

     :ref:`sphx_glr__examples_pandas_plot_main01.py`

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    </div>


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   /_examples/pandas/plot_main01

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    <div class="sphx-glr-thumbcontainer" tooltip="01. pandas_profiling">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_profile01_thumb.png
     :alt: 01. ``pandas_profiling``

     :ref:`sphx_glr__examples_pandas_plot_profile01.py`

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    </div>


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   /_examples/pandas/plot_profile01

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    <div class="sphx-glr-thumbcontainer" tooltip="02. dataprep">

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 .. figure:: /_examples/pandas/images/thumb/sphx_glr_plot_profile02_thumb.png
     :alt: 02. ``dataprep``

     :ref:`sphx_glr__examples_pandas_plot_profile02.py`

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    </div>


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   :hidden:

   /_examples/pandas/plot_profile02
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    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_plotly:

Plotly
------

Gallery of examples using ``plotly``.



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    <div class="sphx-glr-thumbcontainer" tooltip="This example displays a Treemap using a portion of the NHS dataset. This example needs pyAMR to...">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_main06_treemap_v3_thumb.png
     :alt: 06. Plot Treemap with NHS

     :ref:`sphx_glr__examples_plotly_main06_treemap_v3.py`

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    </div>


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   /_examples/plotly/main06_treemap_v3

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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to plot the ROC curves for various splits.">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main01_roc_thumb.png
     :alt: 01. Plot ROC

     :ref:`sphx_glr__examples_plotly_plot_main01_roc.py`

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    </div>


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   /_examples/plotly/plot_main01_roc

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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to plot the probability distributions for each of the components of the ...">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main02_distributions_thumb.png
     :alt: 02. Plot Distributions

     :ref:`sphx_glr__examples_plotly_plot_main02_distributions.py`

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    </div>


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   /_examples/plotly/plot_main02_distributions

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    <div class="sphx-glr-thumbcontainer" tooltip="This example shows to to plot sparklines style graphs.">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main03_sparklines_thumb.png
     :alt: 03. Plot Sparklines

     :ref:`sphx_glr__examples_plotly_plot_main03_sparklines.py`

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    </div>


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   /_examples/plotly/plot_main03_sparklines

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    <div class="sphx-glr-thumbcontainer" tooltip="04. Histogram 2D">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main04_2dhist_thumb.png
     :alt: 04. Histogram 2D

     :ref:`sphx_glr__examples_plotly_plot_main04_2dhist.py`

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    </div>


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   /_examples/plotly/plot_main04_2dhist

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    <div class="sphx-glr-thumbcontainer" tooltip="06. Plot Treemap with coffee">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main06_treemap_v1_thumb.png
     :alt: 06. Plot Treemap with coffee

     :ref:`sphx_glr__examples_plotly_plot_main06_treemap_v1.py`

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    </div>


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   /_examples/plotly/plot_main06_treemap_v1

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    <div class="sphx-glr-thumbcontainer" tooltip="This example displays a Treemap using the MIMIC dataset.">

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 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main06_treemap_v2_thumb.png
     :alt: 06. Plot Treemap with MIMIC

     :ref:`sphx_glr__examples_plotly_plot_main06_treemap_v2.py`

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    </div>


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   /_examples/plotly/plot_main06_treemap_v2

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    <div class="sphx-glr-thumbcontainer" tooltip="This example plots a parallel graph.">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main07_parallel_v1_thumb.png
     :alt: 07. Plot Parallel

     :ref:`sphx_glr__examples_plotly_plot_main07_parallel_v1.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main07_parallel_v1

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example plots a parallel graph.">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main07_parallel_v2_thumb.png
     :alt: 07. Plot Parallel with dengue

     :ref:`sphx_glr__examples_plotly_plot_main07_parallel_v2.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main07_parallel_v2

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="10. Plot sparklines with weather">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main10_weather_thumb.png
     :alt: 10. Plot sparklines with weather

     :ref:`sphx_glr__examples_plotly_plot_main10_weather.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main10_weather

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example show how to include buttons in the plotly graph by using update menus. Work should...">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main11_updatemenus_thumb.png
     :alt: 11. Using updatemenus

     :ref:`sphx_glr__examples_plotly_plot_main11_updatemenus.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main11_updatemenus

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="[REF] https://github.com/plotly/plotly.py/issues/3624#issuecomment-1161805210">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main12_mpl2ply_thumb.png
     :alt: 12. Matplotlib to Plotly

     :ref:`sphx_glr__examples_plotly_plot_main12_mpl2ply.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main12_mpl2ply

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="12. MPL2PLY SHAP summary">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main12_mpl2ply_shap_thumb.png
     :alt: 12. MPL2PLY SHAP summary

     :ref:`sphx_glr__examples_plotly_plot_main12_mpl2ply_shap.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main12_mpl2ply_shap

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="30. Dash LS (empty)">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main30_dash_LS_thumb.png
     :alt: 30. Dash LS (empty)

     :ref:`sphx_glr__examples_plotly_plot_main30_dash_LS.py`

.. raw:: html

    </div>


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   :hidden:

   /_examples/plotly/plot_main30_dash_LS

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="30. Dash Table">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main30_dash_table_thumb.png
     :alt: 30. Dash Table

     :ref:`sphx_glr__examples_plotly_plot_main30_dash_table.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main30_dash_table

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The aim is to visualise all the features for all the timesteps to quickly see which shap values...">

.. only:: html

 .. figure:: /_examples/plotly/images/thumb/sphx_glr_plot_main31_sepsis_shap_boxplot_thumb.png
     :alt: 30. Sample shap.csv boxplot

     :ref:`sphx_glr__examples_plotly_plot_main31_sepsis_shap_boxplot.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/plotly/plot_main31_sepsis_shap_boxplot
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_scikits:

Scikits
-----------------

Gallery of examples using ``scikits``.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Demonstrate that StratifiedKFold is deterministic and always returns the same splits. The way t...">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_data_skfold_test_thumb.png
     :alt: 01. Test Skfold

     :ref:`sphx_glr__examples_scikits_plot_data_skfold_test.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_data_skfold_test

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Useful methods to split data such as (i) hold out and csv sets or (ii) cross validation folds.">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_data_splitters_thumb.png
     :alt: 02. Data splitters

     :ref:`sphx_glr__examples_scikits_plot_data_splitters.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_data_splitters

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Dummy data wrapper">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_data_wrapper_thumb.png
     :alt: 03. Dummy Data Wrapper

     :ref:`sphx_glr__examples_scikits_plot_data_wrapper.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_data_wrapper

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows different configurations of ParamGrid.">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_param_grid_thumb.png
     :alt: 04. ParamGrid

     :ref:`sphx_glr__examples_scikits_plot_param_grid.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_param_grid

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Example of implementing an IQR filter.">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_sklearn_iqr_thumb.png
     :alt: 05. IQRFilter

     :ref:`sphx_glr__examples_scikits_plot_sklearn_iqr.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_sklearn_iqr

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip=" .. note::  https://en.wikipedia.org/wiki/Sensitivity_and_specificity">

.. only:: html

 .. figure:: /_examples/scikits/images/thumb/sphx_glr_plot_threshold_moving_thumb.png
     :alt: 06. Threshold moving approaches

     :ref:`sphx_glr__examples_scikits_plot_threshold_moving.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/scikits/plot_threshold_moving
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_shap:

Shap
----------

Gallery of examples using ``shap``.

.. warning:: The library ``shap`` might have been discontinued (last updates 16th of June 2022).



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="01. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main01_thumb.png
     :alt: 01. Basic example

     :ref:`sphx_glr__examples_shap_plot_main01.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main01

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Computing SHAP values for different classifiers to understand which type of SHAP explainers can...">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main02_thumb.png
     :alt: 02. Basic example

     :ref:`sphx_glr__examples_shap_plot_main02.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main02

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="03. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main03_thumb.png
     :alt: 03. Basic example

     :ref:`sphx_glr__examples_shap_plot_main03.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main03

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="04. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main04_thumb.png
     :alt: 04. Basic example

     :ref:`sphx_glr__examples_shap_plot_main04.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main04

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="05. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main05_thumb.png
     :alt: 05. Basic example

     :ref:`sphx_glr__examples_shap_plot_main05.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main05

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="05. Stripplot">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main05_stripplot_thumb.png
     :alt: 05. Stripplot

     :ref:`sphx_glr__examples_shap_plot_main05_stripplot.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main05_stripplot

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="05. Summary plot">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main05_summaryplot_thumb.png
     :alt: 05. Summary plot

     :ref:`sphx_glr__examples_shap_plot_main05_summaryplot.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main05_summaryplot

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="05. Swarmplot">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main05_swarmplot_thumb.png
     :alt: 05. Swarmplot

     :ref:`sphx_glr__examples_shap_plot_main05_swarmplot.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main05_swarmplot

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="06. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main06_thumb.png
     :alt: 06. Basic example

     :ref:`sphx_glr__examples_shap_plot_main06.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main06

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="07. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main07_thumb.png
     :alt: 07. Basic example

     :ref:`sphx_glr__examples_shap_plot_main07.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main07

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="08. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_plot_main08_thumb.png
     :alt: 08. Basic example

     :ref:`sphx_glr__examples_shap_plot_main08.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/plot_main08

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="06. Basic example">

.. only:: html

 .. figure:: /_examples/shap/images/thumb/sphx_glr_temp_thumb.png
     :alt: 06. Basic example

     :ref:`sphx_glr__examples_shap_temp.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/shap/temp
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_tableone:

TableOne
----------

Gallery of examples using ``tableone``.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Basic usage of the tableone library.">

.. only:: html

 .. figure:: /_examples/tableone/images/thumb/sphx_glr_plot_main01_thumb.png
     :alt: 01. Basic example

     :ref:`sphx_glr__examples_tableone_plot_main01.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/tableone/plot_main01

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Basic usage of the tableone library.">

.. only:: html

 .. figure:: /_examples/tableone/images/thumb/sphx_glr_plot_main02_thumb.png
     :alt: 02. Basic example

     :ref:`sphx_glr__examples_tableone_plot_main02.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/tableone/plot_main02
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_tensorflow:

Tensorflow
----------

Gallery with ``miscellaneous`` examples.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Main">

.. only:: html

 .. figure:: /_examples/tensorflow/images/thumb/sphx_glr_gunn_review_keras_thumb.png
     :alt: Main

     :ref:`sphx_glr__examples_tensorflow_gunn_review_keras.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/tensorflow/gunn_review_keras
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_tpot:

TPOT
-----

Gallery of examples using ``tpot``.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Basic example to use tpot.">

.. only:: html

 .. figure:: /_examples/tpot/images/thumb/sphx_glr_main01_thumb.png
     :alt: 01. Basic example

     :ref:`sphx_glr__examples_tpot_main01.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/tpot/main01
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_ukvi-trips:

UKVI Trips
----------

Script to display outbound/inbound flights provided by UKVI.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="UKVI trips visualisation">

.. only:: html

 .. figure:: /_examples/ukvi-trips/images/thumb/sphx_glr_plot_main01_thumb.png
     :alt: UKVI trips visualisation

     :ref:`sphx_glr__examples_ukvi-trips_plot_main01.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/ukvi-trips/plot_main01
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. _sphx_glr__examples_utils:

Utils
-----

Gallery of examples with useful widgets.



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="v1 = [R, R, R, R] v2 = [R, R, R, R]">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_mic_thumb.png
     :alt: MIC package

     :ref:`sphx_glr__examples_utils_mic.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/mic

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In order to run the script in such a way that we can profile the time used for each method, sta...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_collateral_sensitivity_thumb.png
     :alt: Collateral Sensitivity Index

     :ref:`sphx_glr__examples_utils_plot_collateral_sensitivity.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_collateral_sensitivity

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The DRI measures changes through time in the proportion of disease-causing pathogens that are r...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_drug_resistance_index_thumb.png
     :alt: Drug Resistance Index

     :ref:`sphx_glr__examples_utils_plot_drug_resistance_index.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_drug_resistance_index

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Generate data AST">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_generate_data_AST_thumb.png
     :alt: Generate data AST

     :ref:`sphx_glr__examples_utils_plot_generate_data_AST.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_generate_data_AST

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="See below for a few resources.">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_multi_armed_bandit_thumb.png
     :alt: Multi-Armed bandit problems

     :ref:`sphx_glr__examples_utils_plot_multi_armed_bandit.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_multi_armed_bandit

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The Mutual Information Score, often denoted as MIS, expresses the extent to which observed freq...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_mutual_information_thumb.png
     :alt: Mutual Information Criteria

     :ref:`sphx_glr__examples_utils_plot_mutual_information.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_mutual_information

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The Wikipedia article describes a method step by step how to calculate the position (in helioce...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_planet_orbit_v1_thumb.png
     :alt: Drawing a planet orbit (stackoverflow)

     :ref:`sphx_glr__examples_utils_plot_planet_orbit_v1.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_planet_orbit_v1

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The Wikipedia article describes a method step by step how to calculate the position (in helioce...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_planet_orbit_v2_thumb.png
     :alt: Drawing a planet orbit (customised)

     :ref:`sphx_glr__examples_utils_plot_planet_orbit_v2.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_planet_orbit_v2

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The dummy piece of code included below demonstrates visually that the transformation using the ...">

.. only:: html

 .. figure:: /_examples/utils/images/thumb/sphx_glr_plot_scale_colormap_thumb.png
     :alt: Show colormap for various scalings

     :ref:`sphx_glr__examples_utils_plot_scale_colormap.py`

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    </div>


.. toctree::
   :hidden:

   /_examples/utils/plot_scale_colormap
.. raw:: html

    <div class="sphx-glr-clear"></div>



.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_