:orphan:

Examples with indexes
=====================

.. todo:: Create ``sub-galleries`` for each of the indexes when the
          number of samples grow.

The examples presented in the gallery below show examples to compute
different antimicrobial resistance (AMR) indexes and possible ways to
visualize the outcomes.

  - ``SARI``: Single Antimicrobial Resistance Index
  - ``MARI``: Multiple Antimicrobial Resistance Index
  - ``ASAI``: Antibimicrobial Spectrum of Activity Index
  - ``SART``: Single Antimicrobial Resistance Trend


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="ACSI - Example using MIMIC">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_acsi_b_mimic_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_acsi_b_mimic.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">ACSI - Example using MIMIC</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="ASAI - By gram stain (binary)">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_asai_a_gramtype_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_asai_a_gramtype.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">ASAI - By gram stain (binary)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="ASAI - By gram stain (multiple)">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_asai_b_multiple_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_asai_b_multiple.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">ASAI - By gram stain (multiple)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In order to study the temporal evolution of AMR, it is necessary to generate a resistance time ...">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_asai_c_temporal_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_asai_c_temporal.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">ASAI - Compute timeseries</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In the field of healthcare, analyzing drug resistance in antimicrobial use is crucial for under...">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_dri_b_mimic_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_dri_b_mimic.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">DRI - Example using MIMIC</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="SARI - By specimen w/ sns.heatmap">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_sari_a_antibiogram_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_sari_a_antibiogram.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">SARI - By specimen w/ sns.heatmap</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="SARI - By specimen w/ sns.clustermap">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_sari_b_clustermap_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_sari_b_clustermap.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">SARI - By specimen w/ sns.clustermap</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="SARI - By specimen w/ sns.relmap">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_sari_c_relmap_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_sari_c_relmap.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">SARI - By specimen w/ sns.relmap</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In order to study the temporal evolution of AMR, it is necessary to generate a resistance time ...">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_sari_d_temporal_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_sari_d_temporal.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">SARI - Compute timeseries</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="SART - Trend as slope of WLS">

.. only:: html

  .. image:: /_examples/indexes/images/thumb/sphx_glr_plot_sart_a_basic_thumb.png
    :alt:

  :ref:`sphx_glr__examples_indexes_plot_sart_a_basic.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">SART - Trend as slope of WLS</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /_examples/indexes/plot_acsi_b_mimic
   /_examples/indexes/plot_asai_a_gramtype
   /_examples/indexes/plot_asai_b_multiple
   /_examples/indexes/plot_asai_c_temporal
   /_examples/indexes/plot_dri_b_mimic
   /_examples/indexes/plot_sari_a_antibiogram
   /_examples/indexes/plot_sari_b_clustermap
   /_examples/indexes/plot_sari_c_relmap
   /_examples/indexes/plot_sari_d_temporal
   /_examples/indexes/plot_sart_a_basic



.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_